Common setting for interoperability repo across windows and unix?

Hello,

I have repo in unix. The same repo is cloned onto windows.I have set
"core.autocrlf=input" in both the repos.

When I do some change to a file in windows and push to unix repo, I
get file deleted If I do "git status"?

What is the setting to be done if I want an repo to be
access/push/pulled across windows and unix?



-- 
Dilip